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plural microbiotas or microbiota
The microbial community that inhabits a multi-cellular organism, whether the entire organism or a specific body surface. quotations examples
Caesarean babies eventually acquire the same mix of microbes as those born vaginally — by a year, their microbiota are usually indistinguishable.
2019, Bill Bryson, The Body: A Guide for Occupants, Black Swan (2020), page 348